PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 48904
Common NameSELMODRAFT_48904
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family AP2
Protein Properties Length: 137aa    MW: 15459.3 Da    PI: 8.6486
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
48904genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44e-1475124154
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
            s+y+GV+ +k  grW+A+   +     +k+++lg f t+e+Aa+a++ a+ + +
  48904  75 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFNTEEDAARAYDLAAVRCN 124
            89********.7******5553..2.26*********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.692133IPR001471AP2/ERF domain
SMARTSM003805.9E-4339IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-7434IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-9434IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1875135IPR016177DNA-binding domain
CDDcd000185.75E-2575135No hitNo description
PfamPF008471.1E-975124IPR001471AP2/ERF domain
SMARTSM003808.7E-2876137IPR001471AP2/ERF domain
PROSITE profilePS5103215.77876133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-1776133IPR001471AP2/ERF domain
PRINTSPR003673.3E-67788IPR001471AP2/ERF domain
PRINTSPR003673.3E-6115135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
LFPGGFDTAH AAARAYDKAA IKFRGMDADI NFNLSDYQEE IKQASYTFFS LALLSREEFV  60
HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFNTEE DAARAYDLAA  120
VRCNGGEAVT NFDPSNY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002960867.16e-99hypothetical protein SELMODRAFT_48904, partial
SwissprotP479273e-60AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLD8QQ636e-99D8QQ63_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ384062e-98(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-61AP2 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]